miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
9633990 NC_001271.1 Bacteriophage phiYeO3-12

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
1225 + 2786 90 20.5 -20.6 NP_052070 5' arm      3' arm
1226 + 5369 84 20 -23.1 NP_052071 5' arm      3' arm
1227 + 8210 87 23.5 -26.1 NP_052076 5' arm      3' arm
1228 + 12021 80 22 -22 NP_052087 5' arm      3' arm
1229 + 12234 89 24 -21.4 NP_052088 5' arm      3' arm
1230 + 18086 89 21.5 -20.4 NP_052103 5' arm      3' arm
1231 + 21997 89 23 -23.4 NP_052109 5' arm      3' arm
1232 + 22516 80 20.5 -21.1 NP_052108 5' arm      3' arm
1233 + 26186 88 20 -22.7 5' arm      3' arm
1234 + 31251 88 22 -19.9 NP_052116 5' arm      3' arm
1235 + 32774 88 20.5 -23.22 NP_052116 5' arm      3' arm
1236 + 33990 83 22 -20.7 NP_052117 5' arm      3' arm
1237 + 38461 89 22.5 -23.6 NP_052122 5' arm      3' arm
1238 - 819 90 22.5 -24.4 5' arm      3' arm
1239 - 13537 90 22 -23.9 NP_052092 5' arm      3' arm
1240 - 20476 87 22 -20 NP_052106 5' arm      3' arm
1241 - 21592 89 20.5 -20.5 5' arm      3' arm
1242 - 32857 89 19 -22.2 NP_052116 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.