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GenBank Identifier | RefSeq Acc. | Name |
9626460 | NC_001437.1 | Japanese encephalitis virus |
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ID | strand | start position | length | sRNA loop score | core MFE. | NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
2465 | + | 646 | 80 | 21 | -24.7 | NP_059434 | 5' arm 3' arm | ||
2466 | + | 3542 | 88 | 23 | -21.9 | NP_059434 | 5' arm 3' arm | ||
2467 | + | 6727 | 89 | 20.5 | -27.6 | NP_059434 | 5' arm 3' arm | ||
2468 | + | 8269 | 90 | 21 | -19.6 | NP_059434 | 5' arm 3' arm | ||
2469 | + | 10893 | 84 | 26 | -25.9 | 5' arm 3' arm | |||
2470 | - | 5569 | 89 | 23 | -22.83 | NP_059434 | 5' arm 3' arm | ||
2471 | - | 6136 | 90 | 22 | -24.9 | NP_059434 | 5' arm 3' arm | ||
2472 | - | 9793 | 90 | 21 | -20.7 | NP_059434 | 5' arm 3' arm | ||
2473 | - | 10976 | 84 | 22.5 | -21.5 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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