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| GenBank Identifier | RefSeq Acc. | Name |
| 11528013 | NC_001563.2 | West Nile virus |
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ID
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strand | start position | length | sRNA loop score | core MFE. | NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 3377 | + | 189 | 89 | 24.5 | -26.1 | NP_041724 | 5' arm 3' arm | ||
| 3378 | + | 7267 | 90 | 20.5 | -32.8 | NP_041724 | 5' arm 3' arm | ||
| 3379 | + | 10884 | 79 | 22 | -29.6 | 5' arm 3' arm | |||
| 3380 | - | 8371 | 89 | 21 | -25.3 | NP_041724 | 5' arm 3' arm | ||
| 3381 | - | 10604 | 89 | 23 | -24.9 | 5' arm 3' arm | |||
| 3382 | - | 10961 | 77 | 22.5 | -32.5 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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