miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
20260779 NC_003687.1 Powassan virus

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
14954 + 161 86 19.5 -26.8 NP_620099 5' arm      3' arm
14955 + 543 86 21 -19.6 NP_620099 5' arm      3' arm
14956 + 3418 90 22.5 -27.6 NP_620099 5' arm      3' arm
14957 + 3763 90 24 -20.7 NP_620099 5' arm      3' arm
14958 + 3868 90 24.5 -22.4 NP_620099 5' arm      3' arm
14959 + 4187 89 22 -25.7 NP_620099 5' arm      3' arm
14960 + 4670 86 22.5 -22.2 NP_620099 5' arm      3' arm
14961 + 5085 88 20 -27.5 NP_620099 5' arm      3' arm
14962 + 6403 89 19 -19.7 NP_620099 5' arm      3' arm
14963 + 7439 87 20.5 -23.8 NP_620099 5' arm      3' arm
14964 + 8560 86 19.5 -28.3 NP_620099 5' arm      3' arm
14965 + 9708 90 23.5 -23.3 NP_620099 5' arm      3' arm
14966 + 9876 90 20.5 -20.6 NP_620099 5' arm      3' arm
14967 + 10682 88 19 -26.56 5' arm      3' arm
14968 - 1969 88 19 -22.3 NP_620099 5' arm      3' arm
14969 - 3077 89 19.5 -20.4 NP_620099 5' arm      3' arm
14970 - 8644 89 19 -21.8 NP_620099 5' arm      3' arm
14971 - 10838 85 20.5 -29.91 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.