miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
20260781 NC_003690.1 Langat virus

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
14990 + 7558 90 22.5 -30.5 NP_620108 5' arm      3' arm
14983 + 4230 89 22 -29.2 NP_620108 5' arm      3' arm
14991 + 9832 88 21.5 -29 NP_620108 5' arm      3' arm
14979 + 3438 89 25.5 -27.2 NP_620108 5' arm      3' arm
14976 + 184 89 22 -26.5 NP_620108 5' arm      3' arm
14984 + 4474 89 24 -25.5 NP_620108 5' arm      3' arm
14980 + 3627 90 24 -25.2 NP_620108 5' arm      3' arm
14987 + 6674 90 24 -25.2 NP_620108 5' arm      3' arm
14993 - 10846 86 20 -24.5 5' arm      3' arm
14982 + 4113 90 19 -24.1 NP_620108 5' arm      3' arm
14977 + 1559 90 21 -23.7 NP_620108 5' arm      3' arm
14981 + 4017 83 19.5 -23.3 NP_620108 5' arm      3' arm
14978 + 2748 89 23 -22.3 NP_620108 5' arm      3' arm
14985 + 4663 89 25 -21.2 NP_620108 5' arm      3' arm
14989 + 7426 89 21.5 -21 NP_620108 5' arm      3' arm
14988 + 7269 90 19.5 -20.7 NP_620108 5' arm      3' arm
14992 - 10664 90 21 -20 5' arm      3' arm
14986 + 5631 90 24 -19.4 NP_620108 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.