miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
9627244 NC_002031.1 Yellow fever virus

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
8275 + 1235 90 20.5 -22.7 NP_041726 5' arm      3' arm
8276 + 1622 87 21.5 -27.7 NP_041726 5' arm      3' arm
8277 + 2036 84 25 -19.6 NP_041726 5' arm      3' arm
8278 + 3795 90 20.5 -23.4 NP_041726 5' arm      3' arm
8279 + 4541 90 21.5 -24.2 NP_041726 5' arm      3' arm
8280 + 8132 88 21 -31.3 NP_041726 5' arm      3' arm
8281 + 8343 90 19.5 -20.6 NP_041726 5' arm      3' arm
8282 + 9080 80 20 -23.4 NP_041726 5' arm      3' arm
8283 + 10776 87 23.5 -27.3 5' arm      3' arm
8284 - 10862 87 22 -23.7 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.