miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
60115391 NC_006852.1 Murine hepatitis virus strain JHM

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
31566 + 374 89 20 -27.8 YP_209230 5' arm      3' arm
31567 + 466 89 20 -27.6 YP_209230 5' arm      3' arm
31568 + 1420 86 23 -22.4 YP_209230 5' arm      3' arm
31569 + 1736 90 20 -26.1 YP_209229 5' arm      3' arm
31570 + 2164 89 20.5 -23.7 YP_209229 5' arm      3' arm
31571 + 4206 90 20.5 -21.1 YP_209230 5' arm      3' arm
31572 + 4318 90 22.5 -27.7 YP_209229 5' arm      3' arm
31573 + 6710 90 27 -23.1 YP_209229 5' arm      3' arm
31574 + 6848 90 25.5 -29 YP_209229 5' arm      3' arm
31575 + 8543 90 20 -19.4 YP_209230 5' arm      3' arm
31576 + 9322 90 23 -21.9 YP_209229 5' arm      3' arm
31577 + 9525 88 20 -24.7 YP_209230 5' arm      3' arm
31578 + 12497 87 20 -22.9 YP_209229 5' arm      3' arm
31579 + 15207 88 21.5 -25.8 YP_209229 5' arm      3' arm
31580 + 15591 89 24.5 -21.9 YP_209229 5' arm      3' arm
31581 + 18649 83 22 -22.9 YP_209229 5' arm      3' arm
31582 + 19753 90 20.5 -20.8 YP_209229 5' arm      3' arm
31583 + 20793 85 22.5 -20.6 YP_209229 5' arm      3' arm
31584 + 21978 90 23 -31.7 YP_209231 5' arm      3' arm
31585 + 25351 70 20.5 -26.6 YP_209233 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.