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GenBank Identifier | RefSeq Acc. | Name |
11545722 | NC_002617.1 | Newcastle disease virus |
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ID | strand | start position | length | sRNA loop score | core MFE. | NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
9829 | + | 3250 | 89 | 25.5 | -27.2 | NP_071468 | 5' arm 3' arm | ||
9828 | + | 45 | 88 | 21 | -22.5 | 5' arm 3' arm | |||
9830 | + | 4901 | 90 | 19.5 | -24 | NP_071469 | 5' arm 3' arm | ||
9837 | - | 13718 | 87 | 19 | -26.7 | NP_071471 | 5' arm 3' arm | ||
9835 | - | 6397 | 85 | 20.5 | -21.9 | 5' arm 3' arm | |||
9836 | - | 8440 | 84 | 20 | -25.1 | NP_071471 | 5' arm 3' arm | ||
9833 | - | 3339 | 90 | 24 | -21.8 | NP_071468 | 5' arm 3' arm | ||
9832 | - | 1387 | 89 | 21.5 | -22.1 | NP_071466 | 5' arm 3' arm | ||
9834 | - | 4602 | 89 | 19 | -22.5 | NP_071469 | 5' arm 3' arm | ||
9831 | - | 611 | 89 | 23.5 | -20.1 | NP_071466 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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