miRNA display CGI

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ID	strand	start position	length	sRNA loop score	core MFE.	NP ORF	Known viral miRNA	Match to own genomic region#	Target prediction with RNAhybrid
28312	-	8716	89	25.5	-21.4			5' arm      3' arm
28329	-	49465	88	23.5	-31.5			5' arm      3' arm
28328	-	49241	89	19.5	-23.4			5' arm      3' arm
28327	-	49151	89	19.5	-26			5' arm      3' arm
28326	-	21826	88	24.5	-26.1			5' arm      3' arm
28324	-	19560	78	24	-33.5			5' arm      3' arm
28325	-	19728	90	23	-32.8			5' arm      3' arm
28323	-	17803	89	28.5	-20.2			5' arm      3' arm
28322	-	17518	89	27	-24.2			5' arm      3' arm
28311	+	49378	88	25.5	-20.4			5' arm      3' arm
28310	+	49288	89	28.5	-30.9			5' arm      3' arm
28309	+	49198	89	28.5	-29			5' arm      3' arm
28301	+	19504	86	27.5	-23.8			5' arm      3' arm
28302	+	19635	89	25.5	-29.2			5' arm      3' arm
28305	+	20038	89	25.5	-21.9			5' arm      3' arm
28304	+	19920	89	24	-23			5' arm      3' arm
28303	+	19800	89	23.5	-20.2			5' arm      3' arm
28306	+	27325	87	24	-21.7			5' arm      3' arm
28307	+	49018	89	28.5	-26			5' arm      3' arm
28308	+	49108	89	28.5	-25.7			5' arm      3' arm

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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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