miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
20153395 NC_003610.1 Kyuri green mottle mosaic virus

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
14842 + 213 89 19.5 -20.3 NP_619685 5' arm      3' arm
14843 + 794 89 24.5 -28.8 NP_619684 5' arm      3' arm
14844 + 2325 90 25 -23.3 NP_619684 5' arm      3' arm
14845 + 2869 89 22.5 -21 NP_619685 5' arm      3' arm
14846 + 3138 88 19.5 -23.3 NP_619684 5' arm      3' arm
14847 - 3461 89 25 -28.4 NP_619684 5' arm      3' arm
14848 - 4162 87 19.5 -22.8 NP_619684 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.