miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
62326904 NC_006943.1 Hydrangea ringspot virus

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
31953 - 6050 87 22 -29.9 YP_224088 5' arm      3' arm
31949 - 1669 90 22 -24.7 YP_224084 5' arm      3' arm
31952 - 5935 89 20.5 -25.7 YP_224088 5' arm      3' arm
31951 - 5617 89 20.5 -24 YP_224088 5' arm      3' arm
31950 - 2976 90 20 -29.9 YP_224084 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.