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| GenBank Identifier | RefSeq Acc. | Name |
| 14336454 | NC_002803.1 | Spring viremia of carp virus |
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| ID | strand | start position | length | sRNA loop score |
core MFE.
|
NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 11167 | + | 4680 | 87 | 23.5 | -25.3 | NP_116748 | 5' arm 3' arm | ||
| 11166 | + | 2880 | 90 | 19 | -23.1 | NP_116746 | 5' arm 3' arm | ||
| 11168 | - | 2983 | 90 | 19 | -22.6 | NP_116746 | 5' arm 3' arm | ||
| 11165 | + | 688 | 86 | 20 | -21.3 | NP_116744 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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