miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
9632550 NC_000855.1 Viral hemorrhagic septicemia virus

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
798 - 10773 89 19.5 -29.9 NP_049550 5' arm      3' arm
797 - 10349 90 19.5 -22.4 NP_049550 5' arm      3' arm
796 - 6270 89 19.5 -20.8 NP_049550 5' arm      3' arm
795 - 786 88 21 -24.6 NP_049545 5' arm      3' arm
794 + 10686 87 22 -24.7 NP_049550 5' arm      3' arm
793 + 10001 85 19 -28.8 NP_049550 5' arm      3' arm
792 + 7666 85 19 -20.1 NP_049550 5' arm      3' arm
791 + 1087 90 19 -22.6 NP_049545 5' arm      3' arm
790 + 792 90 19 -20.4 NP_049545 5' arm      3' arm
789 + 449 85 19.5 -22.7 NP_049545 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.