miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
22091104 NC_004084.1 Virus PhiCh1

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
16440 - 37954 88 27.5 -24.6 NP_665973 5' arm      3' arm
16506 - 58465 89 26.5 -29.5 NP_665918 5' arm      3' arm
16400 - 16367 89 26 -27.1 NP_665940 5' arm      3' arm
16296 + 21847 89 26 -23.7 NP_665949 5' arm      3' arm
16458 - 42807 90 25.5 -27.2 NP_665986 5' arm      3' arm
16502 - 57539 88 25.5 -32.9 NP_666013 5' arm      3' arm
16500 - 57258 87 25.5 -28.2 NP_666013 5' arm      3' arm
16318 + 33565 89 25 -22.1 5' arm      3' arm
16396 - 12033 90 25 -31.2 NP_665936 5' arm      3' arm
16363 + 55470 89 25 -30.9 NP_666011 5' arm      3' arm
16266 + 9169 90 25 -25.8 NP_665931 5' arm      3' arm
16408 - 20549 88 25 -27.5 NP_665948 5' arm      3' arm
16433 - 35451 90 24 -24.81 NP_665971 5' arm      3' arm
16392 - 10532 86 24 -24.1 NP_665934 5' arm      3' arm
16388 - 8806 85 24 -27 NP_665930 5' arm      3' arm
16449 - 40297 83 24 -32.2 NP_665977 5' arm      3' arm
16315 + 31787 83 24 -21.6 5' arm      3' arm
16309 + 29202 90 24 -34.9 NP_665959 5' arm      3' arm
16302 + 25475 89 24 -22.6 NP_665953 5' arm      3' arm
16373 - 3423 89 24 -28.3 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.