miRNA display CGI

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ID	strand	start position	length	sRNA loop score	core MFE.	NP ORF	Known viral miRNA	Match to own genomic region#	Target prediction with RNAhybrid
16491	-	53539	89	20	-29	NP_666006		5' arm      3' arm
16429	-	34476	80	21	-29			5' arm      3' arm
16322	+	35301	88	22.5	-29	NP_665971		5' arm      3' arm
16468	-	46072	88	20.5	-29	NP_665993		5' arm      3' arm
16279	+	13797	90	19	-28.5			5' arm      3' arm
16439	-	37724	90	22	-28.4			5' arm      3' arm
16269	+	9747	87	20.5	-28.4	NP_665932		5' arm      3' arm
16451	-	40550	90	20	-28.4	NP_665977		5' arm      3' arm
16325	+	37132	86	19.5	-28.3	NP_665972		5' arm      3' arm
16373	-	3423	89	24	-28.3			5' arm      3' arm
16368	-	878	87	20.5	-28.2	NP_665920		5' arm      3' arm
16500	-	57258	87	25.5	-28.2	NP_666013		5' arm      3' arm
16320	+	34690	87	22.5	-28	NP_665970		5' arm      3' arm
16421	-	25629	89	19.5	-28	NP_665953		5' arm      3' arm
16391	-	9832	87	19.5	-27.9	NP_665932		5' arm      3' arm
16259	+	4181	85	19	-27.9	NP_665924		5' arm      3' arm
16411	-	21668	90	23	-27.9	NP_665949		5' arm      3' arm
16280	+	15450	89	22	-27.6	NP_665940		5' arm      3' arm
16275	+	12737	89	19.5	-27.6	NP_665936		5' arm      3' arm
16436	-	36735	90	19.5	-27.5	NP_665972		5' arm      3' arm

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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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