miRNA display CGI

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ID	strand	start position	length	sRNA loop score	core MFE.	NP ORF	Known viral miRNA	Match to own genomic region#	Target prediction with RNAhybrid
22835	-	68178	87	22	-20.8			5' arm      3' arm
22839	-	109545	77	20	-24.6			5' arm      3' arm
22830	-	16341	82	19	-27.4			5' arm      3' arm
22833	-	54384	89	20	-24.2			5' arm      3' arm
22834	-	64196	81	19	-19.6			5' arm      3' arm
22828	-	8343	82	21	-24.3	NP_932366		5' arm      3' arm
22829	-	13878	87	22	-23.3	NP_932378		5' arm      3' arm
22831	-	16557	88	21.5	-19.5	NP_932385		5' arm      3' arm
22820	+	26606	90	23.5	-24.3	NP_932398		5' arm      3' arm
22822	+	27412	83	22.5	-25.3	NP_932398		5' arm      3' arm
22821	+	26905	88	21	-21.9	NP_932398		5' arm      3' arm
22832	-	53657	89	20.5	-21.4	NP_932448		5' arm      3' arm
22836	-	72431	87	21.5	-20.5	NP_932481		5' arm      3' arm
22837	-	74578	90	20.5	-20.7	NP_932486		5' arm      3' arm
22823	+	87675	84	22.5	-24.3	NP_932500		5' arm      3' arm
22824	+	90064	88	19.5	-25.2	NP_932502		5' arm      3' arm
22838	-	100379	89	20	-25.6	NP_932510		5' arm      3' arm
22825	+	102643	89	21.5	-20	NP_932513		5' arm      3' arm
22840	-	115389	85	23	-27.3	NP_932532		5' arm      3' arm
22841	-	121132	87	21.5	-23.4	NP_932538		5' arm      3' arm

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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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