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| GenBank Identifier | RefSeq Acc. | Name |
| 9626651 | NC_001463.1 | Caprine arthritis-encephalitis virus |
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ID
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strand | start position | length | sRNA loop score | core MFE. | NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 2542 | + | 395 | 88 | 20.5 | -23.2 | 5' arm 3' arm | |||
| 2543 | + | 1861 | 90 | 19.5 | -22.43 | NP_040939 | 5' arm 3' arm | ||
| 2544 | - | 1951 | 89 | 20 | -20.68 | NP_040939 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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