miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
9626953 NC_001499.1 Abelson murine leukemia virus

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
3152 - 423 90 19.5 -21.4 5' arm      3' arm
3158 - 5119 90 20 -26.4 5' arm      3' arm
3145 + 81 90 21.5 -30.4 5' arm      3' arm
3149 + 3581 89 20 -28.7 5' arm      3' arm
3157 - 4911 89 21 -23.64 5' arm      3' arm
3151 + 5143 90 24.5 -22.9 5' arm      3' arm
3159 - 5736 89 21 -23.64 5' arm      3' arm
3155 - 2838 90 20.5 -20.76 NP_057866 5' arm      3' arm
3154 - 2662 89 21.5 -24 NP_057866 5' arm      3' arm
3153 - 1280 90 22.5 -28.7 NP_057866 5' arm      3' arm
3156 - 2929 83 24.5 -29.5 NP_057866 5' arm      3' arm
3147 + 2109 90 19 -21.9 NP_057866 5' arm      3' arm
3146 + 1370 89 20.5 -21.5 NP_057866 5' arm      3' arm
3148 + 3268 88 23 -24 NP_057866 5' arm      3' arm
3150 + 4088 90 22 -21.1 NP_598369 5' arm      3' arm
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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.