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GenBank Identifier | RefSeq Acc. | Name |
9630311 | NC_001885.1 | Gibbon ape leukemia virus |
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ID | strand | start position | length | sRNA loop score | core MFE. | NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
7069 | + | 1703 | 87 | 20.5 | -20.8 | NP_056789 | 5' arm 3' arm | ||
7068 | + | 726 | 90 | 19 | -27.7 | NP_056789 | 5' arm 3' arm | ||
7078 | - | 3694 | 88 | 24.5 | -28.1 | NP_056790 | 5' arm 3' arm | ||
7080 | - | 8084 | 89 | 20.5 | -26.1 | 5' arm 3' arm | |||
7079 | - | 5908 | 88 | 20.5 | -19.7 | NP_056791 | 5' arm 3' arm | ||
7076 | - | 2706 | 90 | 21.5 | -25 | NP_056790 | 5' arm 3' arm | ||
7074 | - | 1790 | 89 | 21 | -20.8 | NP_056789 | 5' arm 3' arm | ||
7072 | - | 922 | 89 | 21 | -32.3 | NP_056789 | 5' arm 3' arm | ||
7073 | - | 1221 | 87 | 20 | -26.8 | NP_056789 | 5' arm 3' arm | ||
7071 | - | 483 | 83 | 20 | -29.5 | 5' arm 3' arm | |||
7077 | - | 2825 | 81 | 19 | -23.9 | NP_056790 | 5' arm 3' arm | ||
7075 | - | 2237 | 88 | 19 | -23.4 | 5' arm 3' arm | |||
7070 | - | 200 | 80 | 19 | -24 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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