miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
9627210 NC_001550.1 Mason-Pfizer monkey virus

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
3343 + 8256 88 20 -31.1 5' arm      3' arm
3345 - 1623 87 21 -26.8 NP_056892 5' arm      3' arm
3344 - 1152 88 19 -26.5 NP_056892 5' arm      3' arm
3342 + 7904 89 20.5 -23.2 5' arm      3' arm
3346 - 2501 90 24 -22.8 NP_056892 5' arm      3' arm
3348 - 8334 89 20 -21.4 5' arm      3' arm
3347 - 6102 85 19.5 -20.2 NP_056894 5' arm      3' arm
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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.