miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
9629514 NC_001819.1 Rauscher murine leukemia virus

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
6069 - 421 90 19 -37.5 5' arm      3' arm
6068 + 7241 87 20 -29 NP_044739 5' arm      3' arm
6063 + 81 89 20 -28.1 5' arm      3' arm
6073 - 2906 89 21.5 -27.9 NP_044738 5' arm      3' arm
6077 - 5752 87 21 -27.7 NP_044738 5' arm      3' arm
6064 + 357 88 20 -27.5 5' arm      3' arm
6082 - 8250 87 19 -26.9 5' arm      3' arm
6066 + 1223 88 21.5 -25.1 NP_044737 5' arm      3' arm
6070 - 1199 88 20 -24.2 NP_044737 5' arm      3' arm
6071 - 1311 90 21 -24.1 NP_044737 5' arm      3' arm
6078 - 6199 89 23.5 -23.6 NP_044739 5' arm      3' arm
6065 + 446 88 21.5 -23.2 5' arm      3' arm
6072 - 2297 90 21.5 -22.7 NP_044738 5' arm      3' arm
6080 - 7074 88 20 -21 NP_044739 5' arm      3' arm
6075 - 4216 89 21 -20.9 NP_044738 5' arm      3' arm
6079 - 6845 90 24.5 -20.8 NP_044739 5' arm      3' arm
6081 - 7233 90 25 -20.06 NP_044739 5' arm      3' arm
6076 - 4977 90 21.5 -20 NP_044738 5' arm      3' arm
6067 + 6111 89 20 -19.8 NP_044739 5' arm      3' arm
6074 - 3234 88 20 -19.54 NP_044738 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.