miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
28212283 NC_001481.2 Feline calicivirus

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
2590 + 1771 81 21 -21.3 NP_783196 5' arm      3' arm
2591 + 2636 84 21.5 -20.6 NP_783196 5' arm      3' arm
2592 + 3272 90 19.5 -23.7 NP_783196 5' arm      3' arm
2593 + 5222 87 19.5 -26 NP_783196 5' arm      3' arm
2594 - 2228 89 19.5 -21.1 NP_783196 5' arm      3' arm
2595 - 3533 90 20 -22.4 NP_783196 5' arm      3' arm
2596 - 5635 86 19 -26.2 NP_783197 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.