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GenBank Identifier | RefSeq Acc. | Name |
20428623 | NC_003747.1 | Ryegrass mottle virus |
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ID | strand | start position | length | sRNA loop score | core MFE. | NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
15083 | + | 486 | 89 | 19.5 | -23 | 5' arm 3' arm | |||
15084 | + | 709 | 89 | 20 | -20.1 | NP_620504 | 5' arm 3' arm | ||
15085 | + | 1061 | 90 | 20 | -26.1 | NP_620504 | 5' arm 3' arm | ||
15086 | + | 1259 | 90 | 20 | -24.7 | NP_620504 | 5' arm 3' arm | ||
15087 | + | 1423 | 89 | 19 | -27 | NP_620504 | 5' arm 3' arm | ||
15088 | + | 2472 | 90 | 20 | -21.2 | NP_620504 | 5' arm 3' arm | ||
15089 | + | 2920 | 88 | 21.5 | -21.6 | NP_620504 | 5' arm 3' arm | ||
15090 | + | 3067 | 88 | 20.5 | -20.6 | NP_620504 | 5' arm 3' arm | ||
15091 | + | 3780 | 86 | 22.5 | -23.8 | NP_620506 | 5' arm 3' arm | ||
15092 | - | 309 | 90 | 19 | -20.9 | NP_620503 | 5' arm 3' arm | ||
15093 | - | 1511 | 89 | 19.5 | -25.7 | NP_620504 | 5' arm 3' arm | ||
15094 | - | 2207 | 80 | 20.5 | -19.5 | NP_620504 | 5' arm 3' arm | ||
15095 | - | 2763 | 90 | 19 | -20.7 | NP_620504 | 5' arm 3' arm | ||
15096 | - | 3567 | 88 | 19 | -20.1 | NP_620506 | 5' arm 3' arm | ||
15097 | - | 3903 | 90 | 21 | -20.7 | NP_620506 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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