miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
12084981 NC_002644.1 Human papillomavirus type 71

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
9977 + 7653 90 22 -28.7 5' arm      3' arm
9979 - 4495 86 22 -24.6 NP_597937 5' arm      3' arm
9978 - 3484 88 21.5 -21.2 NP_597936 5' arm      3' arm
9976 + 6130 87 22.5 -21.1 NP_597938 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.