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| GenBank Identifier | RefSeq Acc. | Name |
| 48429536 | NC_011450.1 | Foot-and-mouth disease virus A |
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| ID | strand | start position | length | sRNA loop score | core MFE. |
NP ORF
|
Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 33654 | + | 224 | 87 | 20 | -23.7 | 5' arm 3' arm | |||
| 33655 | + | 612 | 76 | 20 | -24.6 | 5' arm 3' arm | |||
| 33659 | + | 3408 | 90 | 22 | -22.1 | YP_024315 | 5' arm 3' arm | ||
| 33667 | - | 4175 | 85 | 19 | -24.9 | YP_024315 | 5' arm 3' arm | ||
| 33669 | - | 6311 | 83 | 19 | -26.8 | YP_024315 | 5' arm 3' arm | ||
| 33670 | - | 7048 | 90 | 19.5 | -31.2 | YP_024315 | 5' arm 3' arm | ||
| 33665 | - | 3558 | 90 | 21 | -24.4 | YP_024315 | 5' arm 3' arm | ||
| 33664 | - | 3322 | 90 | 22 | -28.4 | YP_024315 | 5' arm 3' arm | ||
| 33668 | - | 5874 | 86 | 23 | -28.8 | YP_024315 | 5' arm 3' arm | ||
| 33666 | - | 3648 | 89 | 24 | -25.1 | YP_024315 | 5' arm 3' arm | ||
| 33662 | + | 4657 | 87 | 19 | -24.4 | YP_024315 | 5' arm 3' arm | ||
| 33661 | + | 4108 | 88 | 19.5 | -27 | YP_024315 | 5' arm 3' arm | ||
| 33658 | + | 2520 | 85 | 20.5 | -29.2 | YP_024315 | 5' arm 3' arm | ||
| 33656 | + | 1372 | 89 | 20.5 | -25.8 | YP_024315 | 5' arm 3' arm | ||
| 33660 | + | 3861 | 90 | 21.5 | -22.2 | YP_024315 | 5' arm 3' arm | ||
| 33657 | + | 2210 | 89 | 21.5 | -22.9 | YP_024315 | 5' arm 3' arm | ||
| 33663 | - | 2696 | 89 | 25 | -24.02 | YP_024315 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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