miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
10445391 NC_002554.1 Foot-and-mouth disease virus C

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
9561 + 257 89 19.5 -29.4 5' arm      3' arm
9562 + 875 89 19 -22.4 5' arm      3' arm
9563 + 2196 88 23 -30.8 NP_066365 5' arm      3' arm
9564 + 3728 89 20.5 -20.9 NP_066365 5' arm      3' arm
9565 + 4077 90 19.5 -25.1 NP_066365 5' arm      3' arm
9566 + 6681 89 19.5 -26.6 NP_066365 5' arm      3' arm
9567 - 2025 87 21.5 -21.5 NP_066365 5' arm      3' arm
9568 - 2413 90 24.5 -23.7 NP_066365 5' arm      3' arm
9569 - 2590 89 21 -30 NP_066365 5' arm      3' arm
9570 - 2903 88 22.5 -24.2 NP_066365 5' arm      3' arm
9571 - 3817 89 21.5 -21.7 NP_066365 5' arm      3' arm
9572 - 5700 89 19.5 -25.3 NP_066365 5' arm      3' arm
9573 - 5801 88 19 -20.1 NP_066365 5' arm      3' arm
9574 - 7021 89 20.5 -30.8 NP_066365 5' arm      3' arm
9575 - 7152 86 19.5 -27.2 NP_066365 5' arm      3' arm
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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.