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GenBank Identifier | RefSeq Acc. | Name |
21426907 | NC_004004.1 | Foot-and-mouth disease virus O |
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ID | strand | start position | length | sRNA loop score | core MFE. | NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
15540 | + | 1376 | 89 | 22 | -25.7 | NP_658990 | 5' arm 3' arm | ||
15541 | + | 2087 | 89 | 21.5 | -21.9 | NP_658990 | 5' arm 3' arm | ||
15542 | + | 2524 | 85 | 22.5 | -32.3 | NP_658990 | 5' arm 3' arm | ||
15543 | + | 3235 | 87 | 19 | -24.9 | NP_658990 | 5' arm 3' arm | ||
15544 | + | 3408 | 89 | 22.5 | -22.4 | NP_658990 | 5' arm 3' arm | ||
15545 | + | 4024 | 87 | 19.5 | -24.3 | NP_658990 | 5' arm 3' arm | ||
15546 | + | 4115 | 90 | 19.5 | -26.8 | NP_658990 | 5' arm 3' arm | ||
15547 | + | 7580 | 89 | 22 | -21.3 | NP_658990 | 5' arm 3' arm | ||
15548 | - | 116 | 86 | 23 | -21.2 | 5' arm 3' arm | |||
15549 | - | 513 | 89 | 20.5 | -20.2 | 5' arm 3' arm | |||
15550 | - | 2112 | 86 | 20 | -28.1 | NP_658990 | 5' arm 3' arm | ||
15551 | - | 2609 | 90 | 20.5 | -27.4 | NP_658990 | 5' arm 3' arm | ||
15552 | - | 2723 | 90 | 21 | -23 | NP_658990 | 5' arm 3' arm | ||
15553 | - | 2952 | 88 | 20.5 | -20 | NP_658990 | 5' arm 3' arm | ||
15554 | - | 3323 | 90 | 19.5 | -26.8 | NP_658990 | 5' arm 3' arm | ||
15555 | - | 4113 | 80 | 21.5 | -22.9 | NP_658990 | 5' arm 3' arm | ||
15556 | - | 6501 | 90 | 20 | -24.6 | NP_658990 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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