miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
21426907 NC_004004.1 Foot-and-mouth disease virus O

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
15540 + 1376 89 22 -25.7 NP_658990 5' arm      3' arm
15541 + 2087 89 21.5 -21.9 NP_658990 5' arm      3' arm
15542 + 2524 85 22.5 -32.3 NP_658990 5' arm      3' arm
15543 + 3235 87 19 -24.9 NP_658990 5' arm      3' arm
15544 + 3408 89 22.5 -22.4 NP_658990 5' arm      3' arm
15545 + 4024 87 19.5 -24.3 NP_658990 5' arm      3' arm
15546 + 4115 90 19.5 -26.8 NP_658990 5' arm      3' arm
15547 + 7580 89 22 -21.3 NP_658990 5' arm      3' arm
15548 - 116 86 23 -21.2 5' arm      3' arm
15549 - 513 89 20.5 -20.2 5' arm      3' arm
15550 - 2112 86 20 -28.1 NP_658990 5' arm      3' arm
15551 - 2609 90 20.5 -27.4 NP_658990 5' arm      3' arm
15552 - 2723 90 21 -23 NP_658990 5' arm      3' arm
15553 - 2952 88 20.5 -20 NP_658990 5' arm      3' arm
15554 - 3323 90 19.5 -26.8 NP_658990 5' arm      3' arm
15555 - 4113 80 21.5 -22.9 NP_658990 5' arm      3' arm
15556 - 6501 90 20 -24.6 NP_658990 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.