miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
9625551 NC_001339.1 Artichoke mottled crinkle virus

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
1527 + 484 83 19.5 -24.5 NP_039809 5' arm      3' arm
1531 + 2897 88 20.5 -20.1 NP_039810 5' arm      3' arm
1528 + 1072 90 21 -27.61 NP_039808 5' arm      3' arm
1530 + 2303 87 22 -25.7 NP_039808 5' arm      3' arm
1529 + 1374 88 22.5 -22.8 NP_039808 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.