miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
20087024 NC_003532.1 Cymbidium ringspot virus

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
14732 + 549 90 19 -29 NP_613261 5' arm      3' arm
14735 + 1446 90 19 -20.6 NP_613260 5' arm      3' arm
14737 + 4425 87 19.5 -19.8 5' arm      3' arm
14734 + 1355 88 21 -26.3 NP_613260 5' arm      3' arm
14733 + 1055 87 21.5 -24.1 NP_613260 5' arm      3' arm
14738 - 3749 89 22 -21.8 NP_613262 5' arm      3' arm
14736 + 2282 90 25.5 -21.2 NP_613260 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.