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| GenBank Identifier | RefSeq Acc. | Name |
| 9790328 | NC_001554.1 | Tomato bushy stunt virus |
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ID
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strand | start position | length | sRNA loop score | core MFE. | NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 3355 | + | 1058 | 90 | 21 | -24 | NP_062897 | 5' arm 3' arm | ||
| 3356 | + | 1360 | 88 | 21 | -21.7 | NP_062897 | 5' arm 3' arm | ||
| 3357 | + | 2291 | 83 | 23 | -21.1 | NP_062897 | 5' arm 3' arm | ||
| 3358 | + | 2443 | 89 | 24 | -24.8 | NP_062897 | 5' arm 3' arm | ||
| 3359 | + | 2890 | 85 | 22.5 | -22.3 | NP_062899 | 5' arm 3' arm | ||
| 3360 | - | 3547 | 86 | 19 | -20.7 | NP_062899 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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