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| GenBank Identifier | RefSeq Acc. | Name |
| 9628265 | NC_001661.1 | Citrus tristeza virus |
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ID
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strand | start position | length | sRNA loop score | core MFE. | NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 4127 | + | 305 | 88 | 19 | -20.9 | NP_042860 | 5' arm 3' arm | ||
| 4128 | + | 1156 | 90 | 22 | -21.1 | NP_042860 | 5' arm 3' arm | ||
| 4129 | + | 3295 | 89 | 24 | -23.6 | NP_042860 | 5' arm 3' arm | ||
| 4130 | + | 5483 | 90 | 22.5 | -23.9 | NP_042860 | 5' arm 3' arm | ||
| 4131 | + | 5829 | 88 | 22 | -20.6 | NP_042860 | 5' arm 3' arm | ||
| 4132 | + | 10085 | 86 | 19.5 | -25.2 | NP_042860 | 5' arm 3' arm | ||
| 4133 | + | 18931 | 89 | 21 | -25 | NP_042871 | 5' arm 3' arm | ||
| 4134 | - | 951 | 84 | 23 | -21.3 | NP_042860 | 5' arm 3' arm | ||
| 4135 | - | 6931 | 90 | 21.5 | -21.42 | NP_042860 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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