miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
9629460 NC_001812.1 Cymbidium mosaic virus

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
6025 - 94 87 19.5 -20.5 5' arm      3' arm
6026 - 275 87 27.5 -21.8 NP_054025 5' arm      3' arm
6027 - 1643 86 19 -28.4 NP_054025 5' arm      3' arm
6028 - 2326 90 23 -21.01 NP_054025 5' arm      3' arm
6029 - 5672 90 25 -27.9 NP_054029 5' arm      3' arm
6030 - 5873 90 22 -20.1 5' arm      3' arm
6031 - 6120 82 23 -22.6 NP_054029 5' arm      3' arm
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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.