miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
20522103 NC_003794.1 Strawberry mild yellow edge virus

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
15199 + 4581 88 19 -24 NP_620643 5' arm      3' arm
15200 - 94 88 20 -21.6 5' arm      3' arm
15201 - 1188 88 23 -29.8 NP_620642 5' arm      3' arm
15202 - 4671 87 20.5 -23.5 NP_620643 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.