miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
9626508 NC_001445.1 Plum pox virus

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
2480 + 1861 90 19 -23.1 NP_040807 5' arm      3' arm
2481 - 272 89 22.5 -20.2 NP_040807 5' arm      3' arm
2482 - 8680 88 21.5 -20.8 NP_040807 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.