miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
20069869 NC_003530.1 Carnation ringspot virus RNA 1

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
14727 + 1280 86 19 -25.7 NP_619711 5' arm      3' arm
14728 + 1987 85 19 -24.7 NP_619711 5' arm      3' arm
14729 + 3017 90 21 -29.4 NP_613255 5' arm      3' arm
14730 + 3305 89 20 -23.9 NP_613255 5' arm      3' arm
14731 + 3586 89 19 -29.7 NP_613256 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.