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GenBank Identifier | RefSeq Acc. | Name |
50399852 | NC_006056.1 | Arabis mosaic virus RNA 2 |
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ID | strand | start position | length | sRNA loop score | core MFE. | NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
28647 | + | 518 | 87 | 22 | -22.8 | YP_053924 | 5' arm 3' arm | ||
28648 | + | 781 | 89 | 21 | -26.2 | YP_053924 | 5' arm 3' arm | ||
28649 | + | 1028 | 89 | 21 | -22.3 | YP_053924 | 5' arm 3' arm | ||
28650 | + | 1203 | 89 | 20 | -19.7 | YP_053924 | 5' arm 3' arm | ||
28651 | + | 3259 | 90 | 21 | -22.8 | YP_053924 | 5' arm 3' arm | ||
28652 | - | 581 | 88 | 23 | -29.9 | YP_053924 | 5' arm 3' arm | ||
28653 | + | 487 | 87 | 20.5 | -23.2 | YP_053925 | 5' arm 3' arm | ||
28654 | + | 1075 | 76 | 21.5 | -25.8 | YP_053925 | 5' arm 3' arm | ||
28655 | + | 1286 | 86 | 21 | -21.2 | YP_053925 | 5' arm 3' arm | ||
28656 | + | 6199 | 90 | 22.5 | -21.1 | YP_053925 | 5' arm 3' arm | ||
28657 | - | 317 | 88 | 19 | -26.1 | YP_053925 | 5' arm 3' arm | ||
28658 | - | 487 | 90 | 21.5 | -24.6 | YP_053925 | 5' arm 3' arm | ||
28659 | - | 1068 | 90 | 21.5 | -23.6 | YP_053925 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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