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GenBank Identifier | RefSeq Acc. | Name |
20153341 | NC_003615.1 | Grapevine fanleaf virus RNA 1 |
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ID | strand | start position | length | sRNA loop score | core MFE. | NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
14852 | + | 508 | 90 | 22.5 | -23.1 | NP_619689 | 5' arm 3' arm | ||
14853 | + | 791 | 88 | 20 | -29.4 | NP_619689 | 5' arm 3' arm | ||
14854 | + | 1032 | 90 | 20 | -25.9 | NP_619689 | 5' arm 3' arm | ||
14855 | + | 3821 | 90 | 22 | -19.7 | NP_619689 | 5' arm 3' arm | ||
14856 | + | 3986 | 79 | 26.5 | -25.1 | NP_619689 | 5' arm 3' arm | ||
14857 | + | 5370 | 85 | 23 | -20 | NP_619689 | 5' arm 3' arm | ||
14858 | + | 6958 | 86 | 20 | -21 | NP_619689 | 5' arm 3' arm | ||
14871 | + | 592 | 88 | 21 | -23.3 | NP_619706 | 5' arm 3' arm | ||
14872 | + | 777 | 70 | 19 | -24 | NP_619706 | 5' arm 3' arm | ||
14873 | + | 873 | 87 | 20 | -32.4 | NP_619706 | 5' arm 3' arm | ||
14874 | + | 1774 | 88 | 20 | -21 | NP_619706 | 5' arm 3' arm | ||
14875 | - | 586 | 81 | 22 | -33.4 | NP_619706 | 5' arm 3' arm | ||
14876 | - | 2080 | 90 | 19 | -23.6 | NP_619706 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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