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GenBank Identifier | RefSeq Acc. | Name |
26986741 | NC_004439.1 | Tomato black ring virus RNA 1 |
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ID | strand | start position | length | sRNA loop score | core MFE. | NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
17419 | + | 803 | 89 | 22.5 | -35.5 | NP_958814 | 5' arm 3' arm | ||
17420 | + | 1139 | 89 | 21.5 | -19.6 | NP_958814 | 5' arm 3' arm | ||
17421 | + | 1589 | 89 | 21.5 | -21.9 | NP_958814 | 5' arm 3' arm | ||
17422 | + | 3284 | 90 | 21.5 | -20 | NP_958814 | 5' arm 3' arm | ||
17423 | - | 548 | 89 | 21.5 | -22.9 | NP_958814 | 5' arm 3' arm | ||
17424 | - | 1083 | 86 | 19 | -19.9 | NP_958814 | 5' arm 3' arm | ||
17425 | - | 1262 | 89 | 19 | -32.9 | NP_958814 | 5' arm 3' arm | ||
17426 | - | 5325 | 86 | 20.5 | -27.1 | NP_958814 | 5' arm 3' arm | ||
17427 | + | 1172 | 89 | 25 | -24.2 | NP_758518 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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