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GenBank Identifier | RefSeq Acc. | Name |
34610110 | NC_005096.1 | Tobacco ringspot virus RNA 2 |
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ID | strand | start position | length | sRNA loop score | core MFE. | NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
22776 | + | 3106 | 86 | 21 | -26.3 | NP_919039 | 5' arm 3' arm | ||
22777 | + | 3555 | 90 | 20.5 | -22.9 | 5' arm 3' arm | |||
22778 | - | 1742 | 89 | 24 | -22.11 | NP_919039 | 5' arm 3' arm | ||
22779 | + | 97 | 90 | 24 | -24.4 | NP_919040 | 5' arm 3' arm | ||
22780 | + | 201 | 90 | 19 | -22.6 | NP_919040 | 5' arm 3' arm | ||
22781 | + | 378 | 79 | 19.5 | -26.7 | NP_919040 | 5' arm 3' arm | ||
22782 | + | 470 | 89 | 20 | -23.31 | NP_919040 | 5' arm 3' arm | ||
22783 | + | 812 | 85 | 20.5 | -20 | NP_919040 | 5' arm 3' arm | ||
22784 | + | 1137 | 90 | 25 | -24.2 | NP_919040 | 5' arm 3' arm | ||
22785 | + | 2208 | 82 | 19 | -28.4 | NP_919040 | 5' arm 3' arm | ||
22786 | + | 5273 | 90 | 24.5 | -23.3 | NP_919040 | 5' arm 3' arm | ||
22787 | + | 6161 | 90 | 24 | -24.1 | NP_919040 | 5' arm 3' arm | ||
22788 | + | 7140 | 90 | 22 | -22.9 | 5' arm 3' arm | |||
22789 | - | 304 | 84 | 19 | -21.1 | NP_919040 | 5' arm 3' arm | ||
22790 | - | 462 | 90 | 21.5 | -24.5 | NP_919040 | 5' arm 3' arm | ||
22791 | - | 2895 | 90 | 25.5 | -22.1 | NP_919040 | 5' arm 3' arm | ||
22792 | - | 6538 | 90 | 20.5 | -24.9 | NP_919040 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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