miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
22681027 NC_004142.1 Boolarra virus RNA1

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
16619 + 590 84 19.5 -23 NP_689439 5' arm      3' arm
16620 + 993 90 19.5 -21.9 NP_689439 5' arm      3' arm
16621 - 107 90 23.5 -20.4 NP_689443 5' arm      3' arm
16622 - 409 88 21.5 -23.8 NP_689443 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.