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| GenBank Identifier | RefSeq Acc. | Name |
| 20522117 | NC_003805.1 | Tobacco rattle virus RNA 1 |
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| ID | strand | start position | length |
sRNA loop score
|
core MFE. | NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 15218 | + | 1662 | 87 | 20 | -22.5 | NP_620669 | 5' arm 3' arm | ||
| 15220 | + | 4622 | 87 | 22 | -25.7 | NP_620669 | 5' arm 3' arm | ||
| 15219 | + | 4524 | 88 | 23.5 | -21.7 | NP_620669 | 5' arm 3' arm | ||
| 15221 | + | 6154 | 88 | 24.5 | -20.7 | NP_620672 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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