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GenBank Identifier | RefSeq Acc. | Name |
20087039 | NC_003541.1 | Cowpea chlorotic mottle virus RNA 2 |
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ID | strand | start position | length | sRNA loop score | core MFE. | NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
14770 | + | 418 | 88 | 24.5 | -22.7 | NP_613275 | 5' arm 3' arm | ||
14771 | + | 1194 | 89 | 20 | -20.9 | 5' arm 3' arm | |||
14772 | + | 1559 | 89 | 20.5 | -23.5 | NP_613277 | 5' arm 3' arm | ||
14773 | + | 1704 | 89 | 21.5 | -22.9 | NP_613277 | 5' arm 3' arm | ||
14774 | + | 2080 | 90 | 19.5 | -29.6 | 5' arm 3' arm | |||
14775 | - | 1124 | 90 | 19.5 | -20.1 | NP_613276 | 5' arm 3' arm | ||
14776 | - | 2169 | 90 | 19 | -25 | 5' arm 3' arm | |||
14777 | + | 240 | 88 | 21 | -20.2 | NP_613278 | 5' arm 3' arm | ||
14778 | + | 423 | 90 | 25.5 | -23.2 | NP_613278 | 5' arm 3' arm | ||
14779 | + | 589 | 88 | 21.5 | -21 | NP_613278 | 5' arm 3' arm | ||
14780 | + | 3078 | 90 | 20 | -20.3 | 5' arm 3' arm | |||
14781 | - | 362 | 82 | 21.5 | -23.5 | NP_613278 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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