miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
20564157 NC_003836.1 Tomato aspermy virus RNA 3

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
15246 + 161 90 21 -22.94 NP_620758 5' arm      3' arm
15247 + 2239 89 19 -20.3 5' arm      3' arm
15248 + 976 90 22.5 -21.9 NP_620760 5' arm      3' arm
15249 + 3243 90 21.5 -21 5' arm      3' arm
15250 + 2926 89 19 -20.3 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.