miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
39653674 NC_005294.1 Bacteriophage EJ-1 provirus

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
25014 - 4943 89 23 -21.9 NP_945245 5' arm      3' arm
25013 + 41655 89 20.5 -21.7 NP_945312 5' arm      3' arm
25012 + 39838 90 23 -27.9 NP_945308 5' arm      3' arm
25011 + 30559 89 22 -21.7 NP_945294 5' arm      3' arm
25010 + 27180 90 22.5 -25.8 NP_945288 5' arm      3' arm
25009 + 24370 85 21 -26 5' arm      3' arm
25008 + 9065 90 20 -23.3 NP_945255 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.