miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
41057352 NC_005340.1 Bacteriophage PSP3

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
26000 - 1274 90 19.5 -20.5 NP_958057 5' arm      3' arm
25983 + 9954 90 19.5 -25.3 NP_958070 5' arm      3' arm
25988 + 16321 89 25.5 -28 NP_958077 5' arm      3' arm
25991 + 17884 86 22.5 -26.1 NP_958080 5' arm      3' arm
25990 + 17717 85 21 -21.5 NP_958080 5' arm      3' arm
25987 + 15264 82 20 -20.9 NP_958076 5' arm      3' arm
25989 + 16784 90 20 -23.1 NP_958079 5' arm      3' arm
25992 + 18859 90 22.5 -20.4 NP_958080 5' arm      3' arm
25993 + 20591 90 19.5 -19.4 NP_958082 5' arm      3' arm
25984 + 10072 89 21 -22.6 NP_958070 5' arm      3' arm
25986 + 13316 90 22 -25.4 NP_958074 5' arm      3' arm
25985 + 13126 89 23 -22.6 NP_958074 5' arm      3' arm
25978 + 3027 90 21 -24 NP_958058 5' arm      3' arm
25979 + 3542 85 20.5 -22.4 NP_958058 5' arm      3' arm
25976 + 2500 90 20 -23.01 NP_958058 5' arm      3' arm
25977 + 2796 90 19.5 -24.36 NP_958058 5' arm      3' arm
25974 + 175 86 19 -19.5 NP_958056 5' arm      3' arm
25980 + 8205 90 23 -20.34 NP_958066 5' arm      3' arm
25981 + 8537 86 22 -30.2 NP_958066 5' arm      3' arm
25982 + 9218 88 19 -23.3 NP_958069 5' arm      3' arm
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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.