miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
9628590 NC_001696.1 Lucerne transient streak virus

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
4225 + 854 90 23 -25.1 NP_043460 5' arm      3' arm
4226 + 949 86 20 -25.1 NP_043460 5' arm      3' arm
4227 - 2316 83 20 -21.7 NP_043461 5' arm      3' arm
4228 - 3997 87 19.5 -23.4 NP_043462 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.