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| GenBank Identifier | RefSeq Acc. | Name |
| 24323599 | NC_004346.1 | Subterranean clover mottle virus |
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| ID | strand | start position | length | sRNA loop score | core MFE. | NP ORF |
Known viral miRNA
|
Match to own genomic region# | Target prediction with RNAhybrid |
| 17220 | + | 1833 | 90 | 22 | -24.5 | NP_715628 | 5' arm 3' arm | ||
| 17219 | + | 714 | 89 | 21.5 | -24.3 | NP_715628 | 5' arm 3' arm | ||
| 17221 | + | 3958 | 89 | 19.5 | -25.1 | NP_715629 | 5' arm 3' arm | ||
| 17222 | - | 2226 | 89 | 26 | -19.7 | NP_715627 | 5' arm 3' arm | ||
| 17223 | - | 3436 | 87 | 24.5 | -22.2 | NP_715629 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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