miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
33589253 NC_005062.1 Omsk hemorrhagic fever virus

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
22446 + 2288 87 24.5 -27.6 NP_878909 5' arm      3' arm
22447 + 2690 90 19.5 -20.3 NP_878909 5' arm      3' arm
22448 + 3704 90 19.5 -22.7 NP_878909 5' arm      3' arm
22449 + 4055 90 21 -20 NP_878909 5' arm      3' arm
22450 + 4663 84 23.5 -21.4 NP_878909 5' arm      3' arm
22451 + 6058 84 20.5 -24.74 NP_878909 5' arm      3' arm
22452 + 6439 90 20 -30.8 NP_878909 5' arm      3' arm
22453 + 6878 90 19.5 -20.8 NP_878909 5' arm      3' arm
22454 + 7889 88 20 -28.4 NP_878909 5' arm      3' arm
22455 + 9050 90 19.5 -20.6 NP_878909 5' arm      3' arm
22456 + 9828 87 21 -22.3 NP_878909 5' arm      3' arm
22457 + 10701 87 19 -22.9 5' arm      3' arm
22458 - 1985 90 21 -20.9 NP_878909 5' arm      3' arm
22459 - 5630 89 19.5 -21.8 NP_878909 5' arm      3' arm
22460 - 10786 85 20.5 -26.81 5' arm      3' arm
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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.