miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
9628002 NC_001650.1 Equid herpesvirus 2

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
3844 - 14263 90 23 -35.7 5' arm      3' arm
4057 - 181137 90 23 -35.7 5' arm      3' arm
3804 + 163448 90 23 -34.6 5' arm      3' arm
3802 + 161948 78 31 -34.5 5' arm      3' arm
3606 + 25042 84 22 -34 NP_042600 5' arm      3' arm
3615 + 35300 87 19 -33.9 NP_042605 5' arm      3' arm
3731 + 101733 89 19 -33.6 NP_042647 5' arm      3' arm
3686 + 75506 88 24 -33.3 NP_042623 5' arm      3' arm
4042 - 169692 90 22 -33.2 5' arm      3' arm
3828 - 2818 90 22 -33.2 5' arm      3' arm
3912 - 72805 88 20.5 -33.1 NP_042621 5' arm      3' arm
3962 - 108541 89 21 -32.7 NP_042653 5' arm      3' arm
3885 - 42808 89 25 -32.6 5' arm      3' arm
3902 - 65144 87 22 -32.2 NP_042618 5' arm      3' arm
3861 - 25149 87 21.5 -32 NP_042600 5' arm      3' arm
3726 + 95791 89 19.5 -31.9 NP_042642 5' arm      3' arm
3978 - 122415 90 20.5 -31.9 NP_042660 5' arm      3' arm
3993 - 126886 90 30 -31.8 NP_042661 5' arm      3' arm
3660 + 57266 75 20 -31.8 NP_042613 5' arm      3' arm
3657 + 54223 89 19 -31.7 5' arm      3' arm
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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.