miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
9628002 NC_001650.1 Equid herpesvirus 2

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
3663 + 58943 90 19 -20.9 NP_042612 5' arm      3' arm
3584 + 7602 89 19 -22.5 5' arm      3' arm
3586 + 8862 90 19 -21.1 5' arm      3' arm
3710 + 90218 90 19 -29 NP_042638 5' arm      3' arm
3731 + 101733 89 19 -33.6 NP_042647 5' arm      3' arm
3600 + 22953 90 19 -22.2 NP_042600 5' arm      3' arm
3701 + 83948 84 19 -20.5 NP_042633 5' arm      3' arm
3609 + 27023 86 19 -21 NP_042602 5' arm      3' arm
3657 + 54223 89 19 -31.7 5' arm      3' arm
3724 + 95115 86 19 -22.4 NP_042641 5' arm      3' arm
3608 + 26883 88 19 -24.8 NP_042602 5' arm      3' arm
3703 + 87122 88 19 -23.5 NP_042636 5' arm      3' arm
3671 + 61148 89 19 -25.3 NP_042615 5' arm      3' arm
3603 + 24222 82 19 -20.5 NP_042600 5' arm      3' arm
3653 + 49340 90 19 -21.7 NP_042608 5' arm      3' arm
3577 + 4215 81 19 -25.9 5' arm      3' arm
3615 + 35300 87 19 -33.9 NP_042605 5' arm      3' arm
3607 + 25649 90 19 -22.9 NP_042601 5' arm      3' arm
3684 + 72781 90 19 -22.4 NP_042621 5' arm      3' arm
3622 + 37252 86 19 -22.4 NP_042605 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.